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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
311
November, 2017
96
February, 2021
57
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bigWig
17
tsv
14
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
44
Homo sapiens
Biosample type
229
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
31
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
44
AMP
Genome assembly (visualization)
23
hg19
8
GRCh38
Lab
34
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
files.file_type!
csv
organ_slims!
large intestine
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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