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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
425
ChIP-seq
Assay category
425
DNA binding
Target of assay
864
histone modification
863
histone
438
narrow histone mark
425
broad histone mark
222
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
89
August, 2017
66
May, 2021
58
May, 2019
51
October, 2019
42
November, 2017
37
April, 2019
20
May, 2024
19
October, 2018
17
September, 2018
10
October, 2017
8
June, 2019
4
January, 2019
3
December, 2017
1
August, 2021
Available data
371
bigWig
365
bed narrowPeak
322
bam
225
bigBed narrowPeak
127
tagAlign
78
fastq
28
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
Organism
421
Homo sapiens
Biosample type
303
tissue
122
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
68
pancreas
57
heart
45
blood vessel
45
vasculature
34
limb
31
epithelium
26
liver
24
connective tissue
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
spleen
Project
381
AMP
44
T1D
Genome assembly (visualization)
338
GRCh38
316
hg19
Lab
341
AMP-T2D consortium
64
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
Audit category:
8
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
425 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
+ See 11 more…
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