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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
231
total RNA-seq
197
ATAC-seq
145
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
378
Transcription
285
DNA accessibility
277
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
72
September, 2018
September, 2020
57
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
608
bigWig
607
bam
366
fastq
293
bed narrowPeak
270
tsv
134
zippedFastqFolder
107
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
1025
Homo sapiens
Biosample type
2769
tissue
1025
primary cell
632
cell line
391
in vitro differentiated cells
10
stem cell
Organ
387
epithelium
327
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
555
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
626
hg19
531
GRCh38
Lab
520
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
files.file_type!
csv
month_released!
September, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1025 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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