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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
128
ATAC-seq
115
total RNA-seq
55
single cell RNA-seq
29
snATAC-seq
17
pCHi-C
12
DNase-seq
3
Hi-C
3
RRBS
2
small RNA-seq
1
DNAme array
Assay category
172
Transcription
169
DNA accessibility
146
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
135
histone
135
histone modification
74
broad histone mark
61
narrow histone mark
12
control
2
RNA binding protein
2
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
35
June, 2019
18
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
3
February, 2021
1
April, 2018
1
August, 2017
1
March, 2023
1
October, 2019
Available data
381
bigWig
366
bam
188
bed narrowPeak
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
47
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
511
Homo sapiens
Biosample type
2385
tissue
511
primary cell
248
in vitro differentiated cells
156
cell line
6
stem cell
Organ
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
234
AMP
204
T1D
72
HPAP
1
ITG
Genome assembly (visualization)
332
hg19
247
GRCh38
Lab
239
Kyle Gaulton, UCSD
199
AMP-T2D consortium
72
Klaus Kaestner, Upenn
1
ITG
Audit category:
38
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
511 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
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