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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
9
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
287
DNA accessibility
275
DNA binding
57
DNA methylation
4
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
30
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
609
bigWig
604
bam
408
fastq
291
bed narrowPeak
270
tsv
153
zippedFastqFolder
105
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1076
Homo sapiens
Biosample type
2691
tissue
1076
primary cell
652
cell line
390
in vitro differentiated cells
10
stem cell
Organ
401
epithelium
343
pancreas
39
connective tissue
36
kidney
35
vasculature
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
551
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
618
hg19
531
GRCh38
Lab
516
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
54
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
files.file_type!
hic
lab.title!
Xin Sun, UCSD
organ_slims!
eye
BIOSAMPLE
ASSAY
1076 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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