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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
183
single cell RNA-seq
149
ChIP-seq
139
total RNA-seq
48
snATAC-seq
47
WGBS
25
DNase-seq
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
323
Transcription
272
DNA accessibility
149
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
114
histone
114
histone modification
60
narrow histone mark
54
broad histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
405
fastq
392
bam
365
bigWig
163
bed narrowPeak
159
tsv
153
zippedFastqFolder
93
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
810
Homo sapiens
Biosample type
2156
tissue
810
primary cell
649
cell line
250
in vitro differentiated cells
9
stem cell
Organ
406
epithelium
346
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
485
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
378
hg19
323
GRCh38
Lab
485
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
month_released!
October, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
810 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
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