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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
Assay category
122
DNA binding
Target of assay
122
histone
122
histone modification
64
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
37
August, 2017
32
September, 2018
21
October, 2019
19
June, 2019
4
May, 2021
3
August, 2021
3
May, 2019
3
November, 2017
Available data
118
bam
115
bigWig
101
bed narrowPeak
72
fastq
46
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
14
tagAlign
3
bed bed3+
Organism
122
Homo sapiens
Biosample type
628
tissue
122
primary cell
92
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
122
AMP
Genome assembly (visualization)
115
hg19
113
GRCh38
Lab
122
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
skeletal muscle myoblast
11
pancreatic acinar cell
8
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