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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
245
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
391
Transcription
283
DNA accessibility
258
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
53
June, 2019
48
February, 2021
48
July, 2018
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
545
bigWig
538
bam
367
fastq
277
bed narrowPeak
225
tsv
153
zippedFastqFolder
100
tagAlign
91
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1013
Homo sapiens
Biosample type
2638
tissue
1013
primary cell
587
cell line
394
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
313
pancreas
37
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
484
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
559
hg19
474
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
April, 2018
organ_slims!
blood vessel
mammary gland
BIOSAMPLE
ASSAY
1013 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
9
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
9
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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