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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
177
ATAC-seq
105
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
263
DNA accessibility
105
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
81
histone
81
histone modification
41
narrow histone mark
40
broad histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
402
bam
389
bigWig
344
fastq
218
tsv
153
zippedFastqFolder
135
bed narrowPeak
90
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
4
tagAlign
3
cool
2
csv
1
bed bed3
1
tar
Organism
816
Homo sapiens
Biosample type
2453
tissue
816
primary cell
633
cell line
194
in vitro differentiated cells
10
stem cell
Organ
370
epithelium
298
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
445
AMP
317
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
397
hg19
338
GRCh38
Lab
445
AMP-T2D consortium
317
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2017
August, 2020
May, 2021
BIOSAMPLE
ASSAY
816 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
1
pancreatic beta cell
21
12
20
16
1
exocrine cell
39
pancreatic acinar cell
4
12
8
8
1
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