Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
180
ATAC-seq
157
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
260
DNA accessibility
157
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
118
histone
118
histone modification
62
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
459
bam
434
bigWig
401
fastq
218
tsv
167
bed narrowPeak
153
zippedFastqFolder
108
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
866
Homo sapiens
Biosample type
2737
tissue
866
primary cell
572
cell line
262
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
339
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
503
AMP
317
HPAP
45
T1D
1
ITG
Genome assembly (visualization)
443
hg19
379
GRCh38
Lab
503
AMP-T2D consortium
317
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2020
May, 2021
organ_slims!
blood
BIOSAMPLE
ASSAY
866 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
30
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
4
12
9
8
1
+ See 85 more…
See all biosamples
Download