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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
187
single cell RNA-seq
124
total RNA-seq
88
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
313
Transcription
278
DNA binding
176
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
522
bigWig
518
bam
332
fastq
294
bed narrowPeak
213
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
852
Homo sapiens
Biosample type
2489
tissue
852
primary cell
647
cell line
378
in vitro differentiated cells
10
stem cell
Organ
369
epithelium
309
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
444
AMP
248
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
537
hg19
490
GRCh38
Lab
409
AMP-T2D consortium
248
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2023
May, 2020
BIOSAMPLE
ASSAY
852 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
12
25
35
31
1
pancreatic beta cell
13
12
11
23
16
1
CD8-positive, alpha-beta T cell
33
2
1
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