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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
186
single cell RNA-seq
174
total RNA-seq
86
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
362
Transcription
246
DNA binding
174
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
204
histone
204
histone modification
105
broad histone mark
99
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
450
bigWig
446
bam
335
fastq
248
bed narrowPeak
199
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
867
Homo sapiens
Biosample type
2584
tissue
867
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
383
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
465
hg19
418
GRCh38
Lab
348
AMP-T2D consortium
324
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
May, 2020
September, 2018
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
12
42
32
31
1
pancreatic beta cell
13
12
11
19
16
1
exocrine cell
39
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