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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
235
total RNA-seq
196
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
21
DNase-seq
15
pCHi-C
9
RRBS
8
Hi-C
1
DNAme array
1
small RNA-seq
Assay category
419
Transcription
273
DNA accessibility
242
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
207
histone
207
histone modification
106
broad histone mark
101
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
557
bigWig
541
bam
405
fastq
256
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
Organism
1014
Homo sapiens
Biosample type
1990
tissue
1014
primary cell
624
cell line
291
in vitro differentiated cells
9
stem cell
Organ
373
epithelium
346
pancreas
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
486
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
567
hg19
481
GRCh38
Lab
451
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
October, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1014 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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