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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
24
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
266
tissue
21
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
266
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
biosample_type!
cell line
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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