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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
603
ChIP-seq
576
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
770
Transcription
603
DNA binding
462
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
416
histone modification
415
histone
211
broad histone mark
204
narrow histone mark
112
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
191
October, 2019
173
August, 2017
162
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
19
April, 2020
19
November, 2018
16
November, 2017
14
May, 2023
8
January, 2021
8
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1976
Homo sapiens
Biosample type
1977
tissue
939
primary cell
633
cell line
271
in vitro differentiated cells
9
stem cell
Organ
connective tissue
483
pancreas
478
adipose tissue
306
heart
298
kidney
290
liver
158
bone element
146
brain
132
blood vessel
132
vasculature
121
limb
73
artery
64
musculature of body
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1880
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1249
GRCh38
1160
hg19
Lab
1625
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bigBed bedMethyl
tagAlign
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1977 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
61
292
68
6
1
7
4
3
1
4
liver
75
167
20
1
2
1
1
1
3
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
2
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