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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
594
ChIP-seq
Assay category
594
DNA binding
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
167
October, 2019
91
August, 2017
89
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
12
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
519
bigWig
517
bed narrowPeak
464
bam
311
bigBed narrowPeak
179
tagAlign
72
fastq
34
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
588
Homo sapiens
Biosample type
594
tissue
228
primary cell
75
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
95
heart
73
pancreas
69
liver
54
blood vessel
54
vasculature
49
limb
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
592
AMP
2
T1D
Genome assembly (visualization)
492
GRCh38
435
hg19
Lab
559
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2020
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
594 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
50
left cardiac atrium
35
heart left ventricle
24
tibial nerve
24
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