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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
818
ChIP-seq
576
total RNA-seq
247
ATAC-seq
180
single cell RNA-seq
158
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
818
DNA binding
770
Transcription
437
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
583
histone modification
582
histone
309
narrow histone mark
273
broad histone mark
160
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
144
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1377
bam
1260
bigWig
942
bed narrowPeak
619
tsv
527
bigBed narrowPeak
318
fastq
216
tagAlign
188
bed broadPeak
181
bed bed3+
157
txt
156
bigBed broadPeak
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2182
Homo sapiens
Biosample type
2190
tissue
1048
primary cell
654
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
500
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
249
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2093
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1348
GRCh38
1243
hg19
Lab
1839
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
month_released!
October, 2017
organ_slims!
connective tissue
ureter
BIOSAMPLE
ASSAY
2190 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
67
6
1
7
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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