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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
total RNA-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
52
DNA binding
5
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
13
control
Date released
59
October, 2019
1
February, 2020
1
March, 2020
Available data
62
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
61
Homo sapiens
Biosample type
41
tissue
20
primary cell
Organ
917
pancreas
770
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
44
hg19
39
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
audit script error
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
large intestine
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
35
5
1
primary cell
endothelial cell of umbilical vein
17
2
1
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