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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
15
ChIP-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
15
DNA binding
2
DNA methylation
Target of assay
15
control
Date released
54
February, 2021
5
November, 2018
5
October, 2019
4
December, 2018
2
August, 2021
2
February, 2020
2
July, 2019
May, 2019
1
January, 2019
1
March, 2020
Available data
121
bam
98
bigWig
bed narrowPeak
59
tsv
35
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
54
cell line
20
tissue
2
primary cell
Organ
731
pancreas
609
connective tissue
478
adipose tissue
372
epithelium
350
liver
196
heart
170
kidney
151
bone element
92
vasculature
90
blood vessel
80
brain
65
artery
35
musculature of body
29
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
56
GRCh38
54
hg19
Lab
76
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bed narrowPeak
month_released!
May, 2019
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
WGBS
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
2
tissue
spleen
8
2
1
tibial artery
1
5
pulmonary artery
2
coronary artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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