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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
471
Homo sapiens
Biosample type
469
tissue
2
primary cell
1
in vitro differentiated cells
Organ
920
pancreas
635
connective tissue
495
epithelium
472
adipose tissue
434
liver
346
heart
266
kidney
248
brain
212
vasculature
210
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
18
blood
18
bodily fluid
18
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
472
AMP
Genome assembly (visualization)
407
hg19
405
GRCh38
Lab
472
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
stomach
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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