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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
2
ATAC-seq
1
ChIP-seq
Assay category
10
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
8
January, 2021
2
October, 2019
1
January, 2018
Available data
61
bam
fastq
56
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
1
tagAlign
Organism
11
Homo sapiens
Biosample type
8
primary cell
2
tissue
1
cell line
Organ
569
connective tissue
456
pancreas
446
adipose tissue
357
heart
354
kidney
326
liver
264
brain
252
epithelium
195
vasculature
192
blood vessel
151
bone element
122
limb
106
artery
94
musculature of body
43
nerve
30
eye
22
vein
20
lung
18
ureter
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
8
T1D
3
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
8
Kyle Gaulton, UCSD
3
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
month_released!
February, 2023
BIOSAMPLE
ASSAY
11 results
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snATAC-seq
ATAC-seq
ChIP-seq
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
1
pituitary gland
1
cell line
GM12878
1
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