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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
1
Hi-C
Assay category
84
DNA accessibility
54
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
25
bam
fastq
20
bigWig
7
txt
1
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
180
Homo sapiens
Biosample type
134
primary cell
46
tissue
Organ
84
pancreas
80
epithelium
40
liver
2
musculature of body
Project
134
HPAP
46
AMP
Genome assembly (visualization)
24
hg19
2
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
180 results
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ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
3
1
skeletal muscle tissue
1
1
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