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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
32
DNase-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
170
DNA binding
34
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
February, 2023
1
July, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
204
Homo sapiens
Biosample type
193
tissue
11
primary cell
Organ
433
liver
214
pancreas
204
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
80
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
12
bone element
12
skeleton
1
pituitary gland
Project
204
AMP
Genome assembly (visualization)
201
GRCh38
142
hg19
Lab
204
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
files.file_type!
vcf
BIOSAMPLE
ASSAY
204 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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