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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
2
Hi-C
Assay category
86
DNA binding
2
3D chromatin structure
Target of assay
58
histone
58
histone modification
40
narrow histone mark
28
control
18
broad histone mark
Date released
50
May, 2020
20
August, 2017
12
November, 2017
5
August, 2021
1
March, 2020
Available data
673
bam
614
bigWig
457
fastq
433
bed narrowPeak
350
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
88
Homo sapiens
Biosample type
71
tissue
13
cell line
4
primary cell
Organ
118
brain
88
liver
26
pancreas
23
connective tissue
17
musculature of body
12
epithelium
9
adipose tissue
9
heart
8
blood vessel
8
vasculature
6
artery
1
pituitary gland
1
vein
Project
88
AMP
Genome assembly (visualization)
44
hg19
31
GRCh38
Lab
87
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
11
inconsistent control read length
audit.WARNING.category!
inconsistent control run_type
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
Hi-C
tissue
liver
70
1
cell line
HepG2
12
1
primary cell
hepatocyte
4
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