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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
59
total RNA-seq
30
DNase-seq
Assay category
114
DNA binding
59
Transcription
30
DNA accessibility
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
56
February, 2021
47
April, 2019
40
May, 2024
33
June, 2019
July, 2019
15
May, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
203
bigWig
190
bam
187
bed narrowPeak
157
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
203
Homo sapiens
Biosample type
140
tissue
56
cell line
6
primary cell
1
in vitro differentiated cells
Organ
619
pancreas
606
liver
553
connective tissue
413
adipose tissue
294
epithelium
206
brain
203
heart
145
vasculature
140
blood vessel
124
kidney
90
limb
82
artery
63
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pituitary gland
Project
203
AMP
Genome assembly (visualization)
202
GRCh38
160
hg19
Lab
163
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
month_released!
July, 2019
BIOSAMPLE
ASSAY
203 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
1
3
heart
12
2
18
heart right ventricle
11
1
1
right atrium auricular region
7
2
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
52
primary cell
cardiac fibroblast
3
3
in vitro differentiated cells
cardiac fibroblast
1
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