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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
542
ChIP-seq
180
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
542
DNA binding
184
Transcription
31
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
325
transcription factor
111
control
103
histone modification
102
histone
82
recombinant protein
58
narrow histone mark
54
RNA binding protein
44
broad histone mark
15
chromatin remodeller
5
other context
5
other post-translational modification
Date released
311
November, 2017
194
May, 2020
63
December, 2017
58
November, 2018
54
August, 2017
40
May, 2022
August, 2021
12
January, 2019
10
July, 2019
8
December, 2018
7
October, 2019
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
693
bam
613
bigWig
481
fastq
430
bed narrowPeak
363
bigBed narrowPeak
166
tsv
82
tagAlign
64
bed broadPeak
64
bigBed broadPeak
11
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
773
Homo sapiens
Biosample type
386
tissue
362
cell line
15
in vitro differentiated cells
10
primary cell
Organ
940
pancreas
748
liver
679
connective tissue
513
epithelium
490
adipose tissue
280
heart
258
brain
219
kidney
180
vasculature
174
blood vessel
159
bone element
134
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
773
AMP
Genome assembly (visualization)
613
hg19
538
GRCh38
Lab
733
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
27
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2021
May, 2019
BIOSAMPLE
ASSAY
773 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
spleen
20
1
1
2
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
352
5
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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