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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
ChIP-seq
185
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
544
DNA binding
186
Transcription
29
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
330
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
55
RNA binding protein
42
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
311
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
49
November, 2018
40
May, 2022
35
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
666
bam
606
bigWig
457
fastq
433
bed narrowPeak
350
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
773
Homo sapiens
Biosample type
393
cell line
353
tissue
15
in vitro differentiated cells
12
primary cell
Organ
884
pancreas
773
liver
652
connective tissue
478
adipose tissue
459
epithelium
343
kidney
332
heart
267
brain
189
vasculature
184
blood vessel
151
bone element
117
limb
103
artery
86
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
773
AMP
Genome assembly (visualization)
608
hg19
518
GRCh38
Lab
702
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
27
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2023
July, 2019
March, 2023
BIOSAMPLE
ASSAY
773 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
370
14
1
1
2
2
2
1
tissue
liver
145
165
20
2
3
1
1
1
1
right lobe of liver
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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