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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
23
total RNA-seq
13
single cell RNA-seq
11
snATAC-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
257
DNA binding
82
DNA accessibility
42
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
28
July, 2019
26
August, 2017
19
April, 2020
16
October, 2017
14
February, 2020
8
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
36
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
401
Homo sapiens
Biosample type
367
tissue
35
primary cell
Organ
946
pancreas
778
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
383
AMP
19
LungMap
Genome assembly (visualization)
270
GRCh38
237
hg19
Lab
383
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
WGBS
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
1
1
4
1
1
layer of hippocampus
23
muscle of leg
7
13
1
lung
9
10
1
+ See 86 more…
primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
+ See 4 more…
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