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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
Assay category
17
DNA binding
Target of assay
924
histone modification
923
histone
471
narrow histone mark
451
broad histone mark
272
control
266
transcription factor
76
RNA binding protein
23
recombinant protein
17
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
November, 2017
6
January, 2019
3
August, 2017
3
December, 2017
3
November, 2018
2
December, 2018
Available data
17
bam
17
bed narrowPeak
17
bigWig
17
fastq
15
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
17
Homo sapiens
Biosample type
11
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
10
blood
10
bodily fluid
4
liver
2
connective tissue
1
epithelium
Project
17
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
17
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
7
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
November, 2017
organ_slims!
ovary
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
cell line
GM12878
10
HepG2
1
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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