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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
100
ATAC-seq
50
ChIP-seq
48
single cell RNA-seq
1
pCHi-C
Assay category
358
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
447
bam
424
bigWig
353
tsv
50
fastq
50
tagAlign
27
bed narrowPeak
Organism
509
Homo sapiens
Biosample type
313
tissue
195
primary cell
1
cell line
Organ
194
liver
157
pancreas
33
epithelium
2
connective tissue
Project
464
AMP
45
T1D
Genome assembly (visualization)
424
hg19
371
GRCh38
Lab
464
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
month_released!
December, 2018
BIOSAMPLE
ASSAY
509 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
pancreatic alpha cell
7
+ See 39 more…
cell line
HepG2
1
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