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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
total RNA-seq
12
RRBS
12
WGBS
11
small RNA-seq
5
ATAC-seq
5
Hi-C
1
FAIRE-seq
Assay category
38
Transcription
24
DNA methylation
6
DNA accessibility
5
3D chromatin structure
Date released
397
May, 2021
341
May, 2020
314
August, 2021
311
November, 2017
285
August, 2017
260
February, 2021
224
October, 2019
200
May, 2022
190
February, 2023
171
June, 2019
166
July, 2018
94
December, 2017
92
May, 2019
81
November, 2018
80
April, 2019
73
July, 2019
73
September, 2018
60
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
February, 2020
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
6
October, 2017
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
53
bam
53
bigWig
38
tsv
20
bed bedMethyl
20
bigBed bedMethyl
6
bed narrowPeak
1
bed bed3+
1
bigBed narrowPeak
1
hdf5
Organism
73
Homo sapiens
Biosample type
56
tissue
17
primary cell
Organ
25
heart
brain
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
73
AMP
Genome assembly (visualization)
57
hg19
51
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
organ_slims!
brain
connective tissue
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
RRBS
WGBS
small RNA-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
1
2
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 17 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
cardiac muscle cell
1
+ See 8 more…
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