Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
66
ChIP-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
113
DNA accessibility
66
DNA binding
61
Transcription
48
DNA methylation
1
3D chromatin structure
Target of assay
60
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
109
fastq
108
bam
107
bed narrowPeak
96
bigWig
69
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
bedpe
1
csv
1
hic
Organism
289
Homo sapiens
Biosample type
135
primary cell
97
tissue
57
cell line
Organ
116
pancreas
89
liver
80
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
155
AMP
134
HPAP
Genome assembly (visualization)
109
hg19
77
GRCh38
Lab
134
Klaus Kaestner, Upenn
86
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
June, 2018
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
20
2
islet of Langerhans
22
6
1
spleen
6
2
1
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
41
1
GM12878
15
See all biosamples
Download