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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
116
ChIP-seq
100
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
116
DNA binding
110
DNA accessibility
7
DNA methylation
Target of assay
60
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
20
RNA binding protein
16
recombinant protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
366
bam
336
bigWig
189
tsv
96
bed narrowPeak
84
fastq
69
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
425
Homo sapiens
Biosample type
219
tissue
148
primary cell
58
cell line
Organ
243
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
380
AMP
45
T1D
Genome assembly (visualization)
327
hg19
282
GRCh38
Lab
380
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
September, 2023
organ_slims!
skin of body
BIOSAMPLE
ASSAY
425 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
2
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
41
1
1
GM12878
15
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