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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
10
MeRIP-seq
Assay category
314
DNA binding
Target of assay
240
transcription factor
histone
88
histone modification
76
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
314
May, 2020
314
November, 2017
294
August, 2021
260
February, 2021
257
May, 2021
200
May, 2022
191
February, 2023
189
June, 2019
166
July, 2018
157
August, 2017
115
October, 2019
90
July, 2019
83
November, 2018
63
December, 2017
59
March, 2020
59
September, 2020
50
November, 2019
47
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
313
bam
302
fastq
255
bigWig
235
bed narrowPeak
235
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
Organism
324
Homo sapiens
Biosample type
302
cell line
16
tissue
6
primary cell
Organ
296
liver
18
brain
10
epithelium
10
pancreas
connective tissue
4
vasculature
2
blood vessel
Project
324
AMP
Genome assembly (visualization)
253
hg19
205
GRCh38
Lab
314
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
324 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
296
EndoC_BH1
6
tissue
islet of Langerhans
4
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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