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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
1
Hi-C
Assay category
23
DNA binding
1
3D chromatin structure
Target of assay
13
histone
13
histone modification
10
transcription factor
7
narrow histone mark
6
broad histone mark
2
chromatin remodeller
Date released
11
December, 2017
10
August, 2017
February, 2018
2
November, 2017
1
October, 2019
Available data
57
bigWig
56
bam
56
fastq
54
bed narrowPeak
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
11
bed bed3+
1
hdf5
Organism
24
Homo sapiens
Biosample type
15
in vitro differentiated cells
4
primary cell
3
cell line
2
stem cell
Organ
6
connective tissue
5
epithelium
5
pancreas
3
embryo
2
liver
Project
24
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
23
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
month_released!
February, 2018
organ_slims!
large intestine
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
cell line
HepG2
2
Panc1
1
stem cell
hESC
2
See all biosamples
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