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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
27
histone
27
histone modification
21
transcription factor
15
narrow histone mark
13
chromatin remodeller
12
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
14
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
59
bigWig
58
bam
58
fastq
56
bed narrowPeak
33
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
bed bed3+
1
hdf5
Organism
47
Homo sapiens
Biosample type
26
cell line
9
in vitro differentiated cells
7
tissue
6
primary cell
Organ
27
liver
10
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
48
AMP
Genome assembly (visualization)
48
hg19
44
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
46
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
5
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
2
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