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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
Assay category
46
DNA binding
Target of assay
26
histone
26
histone modification
26
transcription factor
15
broad histone mark
14
chromatin remodeller
11
narrow histone mark
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
11
August, 2017
11
December, 2017
4
November, 2018
2
February, 2018
1
October, 2018
Available data
46
bam
46
bigWig
46
fastq
44
bed narrowPeak
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
46
Homo sapiens
Biosample type
21
cell line
17
in vitro differentiated cells
6
tissue
primary cell
2
stem cell
Organ
22
liver
6
connective tissue
5
pancreas
3
embryo
1
epithelium
Project
46
AMP
Genome assembly (visualization)
46
hg19
42
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
45
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
biosample_type!
primary cell
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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