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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
23
histone
23
histone modification
18
transcription factor
14
chromatin remodeller
13
narrow histone mark
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
22
November, 2017
12
August, 2017
December, 2017
5
November, 2018
2
February, 2018
October, 2018
Available data
45
bam
45
bigWig
45
fastq
43
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
41
Homo sapiens
Biosample type
27
cell line
5
primary cell
5
tissue
4
in vitro differentiated cells
Organ
28
liver
8
pancreas
4
epithelium
2
connective tissue
Project
41
AMP
Genome assembly (visualization)
41
hg19
36
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
40
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
month_released!
December, 2017
October, 2018
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
27
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
liver
1
in vitro differentiated cells
adipocyte
2
definitive endodermal cell
2
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