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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
19
transcription factor
15
histone
15
histone modification
11
chromatin remodeller
8
narrow histone mark
7
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
40
bam
40
bigWig
40
fastq
38
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
34
Homo sapiens
Biosample type
26
cell line
7
in vitro differentiated cells
1
tissue
Organ
26
liver
2
embryo
1
epithelium
1
pancreas
Project
34
AMP
Genome assembly (visualization)
34
hg19
30
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
34
inconsistent control read length
8
inconsistent control run_type
award.project!
KPMP
files.file_type!
bed bed3+
bedpe bed3+
month_released!
August, 2017
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
3
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
tissue
body of pancreas
1
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