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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
25
histone
25
histone modification
21
transcription factor
15
narrow histone mark
13
chromatin remodeller
10
broad histone mark
RNA binding protein
1
recombinant protein
Date released
16
November, 2017
12
August, 2017
5
December, 2017
4
November, 2018
2
February, 2018
1
October, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
40
Homo sapiens
Biosample type
20
cell line
9
in vitro differentiated cells
6
tissue
5
primary cell
Organ
21
liver
9
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
40
AMP
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
40
inconsistent control read length
6
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
month_released!
December, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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