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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
22
histone
22
histone modification
15
transcription factor
13
narrow histone mark
11
chromatin remodeller
9
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
19
November, 2017
10
August, 2017
5
November, 2018
2
December, 2017
1
October, 2018
Available data
39
bam
39
bigWig
39
fastq
37
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bed3+
Organism
37
Homo sapiens
Biosample type
24
cell line
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
25
liver
9
pancreas
4
epithelium
Project
37
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
37
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
March, 2019
May, 2021
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
HepG2
24
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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