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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
21
transcription factor
20
histone
20
histone modification
13
chromatin remodeller
10
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
7
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
41
Homo sapiens
Biosample type
26
cell line
9
in vitro differentiated cells
6
tissue
primary cell
Organ
27
liver
5
pancreas
2
connective tissue
2
embryo
1
epithelium
Project
41
AMP
Genome assembly (visualization)
41
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
41
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bed bed3+
organ_slims!
intestine
vein
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
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