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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
25
transcription factor
14
histone
14
histone modification
13
chromatin remodeller
9
broad histone mark
6
RNA binding protein
5
narrow histone mark
1
recombinant protein
Date released
11
August, 2017
10
December, 2017
10
November, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tagAlign
10
bed bed3+
Organism
39
Homo sapiens
Biosample type
16
in vitro differentiated cells
15
cell line
6
tissue
2
stem cell
primary cell
Organ
16
liver
6
connective tissue
5
pancreas
3
embryo
epithelium
Project
39
AMP
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
39
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
cell line
HepG2
15
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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