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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
Assay category
45
DNA binding
Target of assay
24
histone
24
histone modification
21
transcription factor
14
narrow histone mark
13
chromatin remodeller
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
12
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
October, 2018
Available data
55
bam
55
bigWig
55
fastq
53
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
45
Homo sapiens
Biosample type
26
cell line
9
in vitro differentiated cells
5
primary cell
5
tissue
Organ
27
liver
8
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
45
AMP
Genome assembly (visualization)
45
hg19
41
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
45
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2018
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
liver
1
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