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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
Assay category
43
DNA binding
Target of assay
31
histone
31
histone modification
25
transcription factor
16
narrow histone mark
15
broad histone mark
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
14
August, 2017
11
December, 2017
2
February, 2018
1
October, 2018
Available data
43
bam
43
bigWig
43
fastq
41
bed narrowPeak
20
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
43
Homo sapiens
Biosample type
15
cell line
15
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
16
liver
9
pancreas
5
epithelium
4
connective tissue
3
embryo
Project
43
AMP
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
43
inconsistent control read length
4
inconsistent assembly
1
inconsistent control run_type
lab.title!
Bing Ren, UCSD
month_released!
May, 2019
organ_slims!
blood
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
cell line
HepG2
15
in vitro differentiated cells
adipocyte
4
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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