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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
25
transcription factor
22
histone
22
histone modification
13
chromatin remodeller
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
8
August, 2017
6
December, 2017
5
November, 2018
1
February, 2018
Available data
35
bam
35
bigWig
35
fastq
34
bed narrowPeak
21
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
5
tagAlign
Organism
35
Homo sapiens
Biosample type
20
cell line
12
in vitro differentiated cells
1
primary cell
1
stem cell
1
tissue
Organ
21
liver
6
connective tissue
pancreas
5
epithelium
2
embryo
Project
35
AMP
Genome assembly (visualization)
35
hg19
32
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
35
inconsistent control read length
9
inconsistent control run_type
1
inconsistent assembly
lab.title!
Karen Mohlke, UNC
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
stem cell
hESC
1
tissue
liver
1
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