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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
Assay category
52
DNA binding
Target of assay
29
histone
29
histone modification
24
transcription factor
15
narrow histone mark
14
broad histone mark
13
chromatin remodeller
6
RNA binding protein
recombinant protein
Date released
20
November, 2017
16
August, 2017
8
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
52
bam
52
bigWig
52
fastq
50
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
9
bed bed3+
Organism
52
Homo sapiens
Biosample type
25
cell line
14
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
26
liver
9
pancreas
6
connective tissue
5
epithelium
embryo
Project
52
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
52
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
month_released!
May, 2023
October, 2017
organ_slims!
embryo
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
cell line
HepG2
25
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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