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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56ChIP-seq
Assay category
  • 56DNA binding
Target of assay
  • 31histone
  • 31histone modification
  • 25transcription factor
  • 16narrow histone mark
  • 15broad histone mark
  • 13chromatin remodeller
  • 6RNA binding protein
  • 1recombinant protein
Date released
  • 21November, 2017
  • 16August, 2017
  • 11December, 2017
  • 5November, 2018
  • 2February, 2018
  • 1October, 2018
Available data
  • 56bam
  • 56bigWig
  • 56fastq
  • 54bed narrowPeak
  • 31bigBed narrowPeak
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11tagAlign
  • 10bed bed3+
Organism
  • 56Homo sapiens
Biosample type
  • 26cell line
  • 17in vitro differentiated cells
  • 6tissue
  • 5primary cell
  • 2stem cell
Organ
  • 27liver
  • 9pancreas
  • 6connective tissue
  • 5epithelium
  • 3embryo
Project
  • 56AMP
Genome assembly (visualization)
  • 56hg19
  • 52GRCh38
Lab
  • 56AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

56 results

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Clear Filters
ChIP-seq
cell line
HepG226
in vitro differentiated cells
adipocyte6
definitive endodermal cell4
Posterior foregut2
pancreatic endoderm2
primitive gut cell2
tissue
pancreas4
body of pancreas1
liver1
primary cell
pancreatic alpha cell2
pancreatic beta cell2
skeletal muscle myoblast1
stem cell
hESC2
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