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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
85
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
Transcription
85
DNA binding
8
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
152
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
4
March, 2023
March, 2020
Available data
181
bam
181
bigWig
96
tsv
85
bed narrowPeak
84
tagAlign
Organism
210
Homo sapiens
Biosample type
204
primary cell
tissue
8
cell line
2
stem cell
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
pancreas
Project
AMP
HPAP
210
T1D
4
community
Genome assembly (visualization)
181
GRCh38
181
hg19
Lab
209
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
ITG
Audit category:
6
inconsistent ontology term
award.project!
AMP
HPAP
biosample_type!
tissue
lab.title!
ITG
month_released!
March, 2020
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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