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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
86
ChIP-seq
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
1
Hi-C
Assay category
159
Transcription
86
DNA binding
39
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
47
September, 2023
45
May, 2020
19
April, 2020
18
February, 2023
16
January, 2021
4
March, 2020
1
March, 2023
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
1
hic
Organism
301
Homo sapiens
Biosample type
205
primary cell
97
tissue
11
cell line
2
stem cell
Organ
47
kidney
30
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
183
GRCh38
182
hg19
Lab
231
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
5
inconsistent ontology term
award.project!
AMP
HPAP
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
Hi-C
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
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